If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ), 'gf_id' => 'HOM05D000953', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000953' ), 'data_identifier' => 'HOM05D000953', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000953', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08380' => 'bna', 'A02p01330' => 'bna', 'A03p38810' => 'bna', 'A03p44890' => 'bna', 'A03p59180' => 'bna', 'A09p48240' => 'bna', 'A10p25750' => 'bna', 'Aa31LG10G10360' => 'aar', 'Aa31LG10G17130' => 'aar', 'Aa31LG2G20760' => 'aar', 'Aa31LG3G15210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2564' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.519' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1081' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3380' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4090' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1222' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4497' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2' => 'aag', 'Actinidia02972' => 'ach', 'Actinidia03556' => 'ach', 'Actinidia03782' => 'ach', 'Actinidia07065' => 'ach', 'Actinidia07709' => 'ach', 'Actinidia21138' => 'ach', 'Actinidia24919' => 'ach', 'Actinidia25238' => 'ach', 'Actinidia29325' => 'ach', 'Actinidia34337' => 'ach', 'Actinidia34341' => 'ach', 'Actinidia37239' => 'ach', 'Actinidia38705' => 'ach', 'Actinidia39705' => 'ach', 'Ah.01g018950' => 'amhyb', 'Ah.04g163080' => 'amhyb', 'Ah.06g191780' => 'amhyb', 'Ah.09g227970' => 'amhyb', 'Ah.14g079020' => 'amhyb', 'Ah.14g084890' => 'amhyb', 'AL2G31930' => 'aly', 'AL5G36490' => 'aly', 'AL5G46120' => 'aly', 'AL668U10020' => 'aly', 'AL6G22800' => 'aly', 'AL7G22470' => 'aly', 'Aqoxy1G02349' => 'aox', 'Aqoxy2G03419' => 'aox', 'Aqoxy4G03006' => 'aox', 'Aqoxy6G01274' => 'aox', 'Aqoxy7G01147' => 'aox', 'Aqoxy7G03590' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08RMNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0R9IFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4L58E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VRB03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Y46JP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EABL5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYK4NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N54HYV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB4RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5JLJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.URH2DX' => 'arhy', 'AT1G72275' => 'ath', 'AT3G55350' => 'ath', 'AT3G63270' => 'ath', 'AT4G29780' => 'ath', 'AT5G12010' => 'ath', 'ATR0051G066' => 'atr', 'ATR0071G024' => 'atr', 'ATR0113G005' => 'atr', 'ATR0665G491' => 'atr', 'ATR0767G026' => 'atr', 'ATR0800G020' => 'atr', 'Atru.chr12.521' => 'acertr', 'Atru.chr3.3821' => 'acertr', 'Atru.chr3.3822' => 'acertr', 'Atru.chr5.1497' => 'acertr', 'Atru.chr5.2653' => 'acertr', 'Atru.chr7.1638' => 'acertr', 'Atru.chr7.1927' => 'acertr', 'Atru.chr7.1928' => 'acertr', 'AUR62000404' => 'cqu', 'AUR62000410' => 'cqu', 'AUR62000415' => 'cqu', 'AUR62001836' => 'cqu', 'AUR62003765' => 'cqu', 'AUR62006761' => 'cqu', 'AUR62009624' => 'cqu', 'AUR62010411' => 'cqu', 'AUR62011229' => 'cqu', 'AUR62011986' => 'cqu', 'AUR62016805' => 'cqu', 'AUR62020004' => 'cqu', 'AUR62029025' => 'cqu', 'AUR62032297' => 'cqu', 'AUR62032299' => 'cqu', 'AUR62033922' => 'cqu', 'BcaB01g00110' => 'bca', 'BcaB01g05435' => 'bca', 'BcaB02g08071' => 'bca', 'BcaB02g08072' => 'bca', 'BcaB08g34525' => 'bca', 'BcaC01g03129' => 'bca', 'BcaC03g13406' => 'bca', 'BcaC07g39848' => 'bca', 'BcaC09g51755' => 'bca', 'BcaNung00493' => 'bca', 'BcaNung02632' => 'bca', 'BolC1t00930H' => 'bol', 'BolC2t06500H' => 'bol', 'BolC3t13124H' => 'bol', 'BolC3t17858H' => 'bol', 'BolC4t25269H' => 'bol', 'BolC7t46194H' => 'bol', 'BolC8t50670H' => 'bol', 'BolC9t59315H' => 'bol', 'BraA01t00786Z' => 'bra', 'BraA02t05112Z' => 'bra', 'BraA03t13028Z' => 'bra', 'BraA03t13625Z' => 'bra', 'BraA03t14977Z' => 'bra', 'BraA04t15734Z' => 'bra', 'BraA09t40277Z' => 'bra', 'BraA10t44641Z' => 'bra', 'C01p09420' => 'bna', 'C02p05560' => 'bna', 'C03p06170' => 'bna', 'C03p55770' => 'bna', 'C04p29950' => 'bna', 'C07p57240' => 'bna', 'C08p30510' => 'bna', 'C09p64840' => 'bna', 'CAN.G1281.8' => 'can', 'CANSAT11G2208' => 'cansat', 'CANSAT25G0593' => 'cansat', 'CANSAT25G2130' => 'cansat', 'CANSAT25G3417' => 'cansat', 'CANSAT54G1655' => 'cansat', 'CANSAT56G3343' => 'cansat', 'CANSAT56G3639' => 'cansat', 'CARHR065130' => 'chi', 'CARHR165360' => 'chi', 'CARHR201120' => 'chi', 'CARHR237680' => 'chi', 'CARHR291680' => 'chi', 'Ca_01343_v3' => 'car', 'Ca_08620_v3' => 'car', 'Ca_08628_v3' => 'car', 'Ca_11294_v3' => 'car', 'Ca_13099_v3' => 'car', 'Ca_13131_v3' => 'car', 'Ca_18699_v3' => 'car', 'Ca_21298_v3' => 'car', 'Ca_21635_v3' => 'car', 'CBR_g46720' => 'cbr', 'CBR_g46722' => 'cbr', 'Cc02_g18960' => 'ccan', 'Cc04_g13230' => 'ccan', 'Cc06_g07620' => 'ccan', 'Cc06_g11710' => 'ccan', 'Cc06_g20320' => 'ccan', 'Cc08_g10960' => 'ccan', 'Cc10_g10720' => 'ccan', 'Cc10_g10730' => 'ccan', 'CDE01G0695' => 'cde', 'CDE02G2936' => 'cde', 'CDE02G4265' => 'cde', 'CDE02G4693' => 'cde', 'CDE04G0488' => 'cde', 'CDE04G1957' => 'cde', 'CDE07G0713' => 'cde', 'CDE09G1434' => 'cde', 'Cfa001518' => 'cfa', 'Cfa003052' => 'cfa', 'Cfa017982' => 'cfa', 'ClCG03G001890' => 'cla', 'ClCG03G015390' => 'cla', 'ClCG05G010130' => 'cla', 'ClCG05G018050' => 'cla', 'ClCG07G003160' => 'cla', 'ClCG09G007340' => 'cla', 'ClCG11G003520' => 'cla', 'COL.COLO4_09052' => 'col', 'COL.COLO4_13122' => 'col', 'COL.COLO4_14946' => 'col', 'COL.COLO4_18162' => 'col', 'COL.COLO4_18449' => 'col', 'COL.COLO4_21098' => 'col', 'COL.COLO4_24125' => 'col', 'COL.COLO4_25809' => 'col', 'COL.COLO4_28826' => 'col', 'COL.COLO4_32634' => 'col', 'Cpa.g.sc1.355' => 'cpa', 'Cpa.g.sc1.356' => 'cpa', 'Cpa.g.sc190.32' => 'cpa', 'Cpa.g.sc200.29' => 'cpa', 'Cpa.g.sc28.125' => 'cpa', 'Cpa.g.sc29.100' => 'cpa', 'Cpa.g.sc52.107' => 'cpa', 'Cpa.g.sc7.152' => 'cpa', 'CsaV3_1G033670' => 'csa', 'CsaV3_1G040660' => 'csa', 'CsaV3_2G003390' => 'csa', 'CsaV3_3G018390' => 'csa', 'CsaV3_4G035840' => 'csa', 'CsaV3_5G006910' => 'csa', 'CsaV3_7G025060' => 'csa', 'CSS0004704' => 'camsi', 'CSS0008052' => 'camsi', 'CSS0014843' => 'camsi', 'CSS0016136' => 'camsi', 'CSS0018185' => 'camsi', 'CSS0024070' => 'camsi', 'CSS0030632' => 'camsi', 'CSS0033968' => 'camsi', 'CSS0035184' => 'camsi', 'CSS0036164' => 'camsi', 'CSS0037175' => 'camsi', 'DCAR_000807' => 'dca', 'Dinv10214' => 'din', 'Dinv12445' => 'din', 'Dinv15733' => 'din', 'Dinv15896' => 'din', 'Dinv31421' => 'din', 'Dinv31422' => 'din', 'Dinv32850' => 'din', 'Dinv36790' => 'din', 'Dinv39478' => 'din', 'Dinv41442' => 'din', 'Dinv41821' => 'din', 'Dinv42345' => 'din', 'Duzib106G0235' => 'dzi', 'Duzib114G0157' => 'dzi', 'Duzib132G0406' => 'dzi', 'Duzib132G0861' => 'dzi', 'Duzib133G0820' => 'dzi', 'Duzib150G0060' => 'dzi', 'Duzib150G0861' => 'dzi', 'Duzib150G0905' => 'dzi', 'Duzib168G1412' => 'dzi', 'Duzib168G1564' => 'dzi', 'Duzib168G1990' => 'dzi', 'Duzib168G2279' => 'dzi', 'Duzib170G0033' => 'dzi', 'Duzib187G0745' => 'dzi', 'Duzib187G0887' => 'dzi', 'Duzib211G0397' => 'dzi', 'Duzib248G1655' => 'dzi', 'ECA234G1366' => 'eca', 'ECA234G2313' => 'eca', 'ECA234G3320' => 'eca', 'ECA236G1477' => 'eca', 'ECA236G3543' => 'eca', 'ECA238G4362' => 'eca', 'ECA240G3951' => 'eca', 'ECA240G4626' => 'eca', 'ECA248G3218' => 'eca', 'EL10Ac1g02137' => 'bvu', 'EL10Ac4g09480' => 'bvu', 'EL10Ac5g10512' => 'bvu', 'EL10Ac7g15964' => 'bvu', 'EL10Ac8g18789' => 'bvu', 'EL10Ac8g19165' => 'bvu', 'EL10Ac9g21657' => 'bvu', 'FAN19G2374' => 'fan', 'FAN20G3018' => 'fan', 'FAN21G0037' => 'fan', 'FAN23G3006' => 'fan', 'FAN24G0048' => 'fan', 'FAN24G2231' => 'fan', 'FAN26G3127' => 'fan', 'FAN28G0241' => 'fan', 'FvH4_1g01971' => 'fve', 'FvH4_1g07981' => 'fve', 'FvH4_2g05781' => 'fve', 'FvH4_2g23101' => 'fve', 'FvH4_2g31471' => 'fve', 'FvH4_3g35001' => 'fve', 'FvH4_7g21532' => 'fve', 'Gorai.013G226800' => 'gra', 'GSVIVG01001197001' => 'vvi', 'GSVIVG01016602001' => 'vvi', 'GSVIVG01025032001' => 'vvi', 'GSVIVG01035416001' => 'vvi', 'HanXRQChr05g0134211' => 'han', 'HanXRQChr06g0175921' => 'han', 'HanXRQChr07g0198641' => 'han', 'HanXRQChr09g0248321' => 'han', 'HanXRQChr10g0309761' => 'han', 'HanXRQChr10g0314141' => 'han', 'HanXRQChr12g0359121' => 'han', 'Haze_04664' => 'cav', 'Haze_04756' => 'cav', 'Haze_10100' => 'cav', 'Haze_17023' => 'cav', 'Haze_18148' => 'cav', 'Haze_24033' => 'cav', 'Haze_25442' => 'cav', 'Haze_25945' => 'cav', 'Hma1.2p1_0169F.1_g074810' => 'hma', 'Hma1.2p1_0196F.1_g084870' => 'hma', 'Hma1.2p1_0474F.1_g160540' => 'hma', 'Hma1.2p1_0573F.1_g181370' => 'hma', 'Hma1.2p1_0624F.1_g191220' => 'hma', 'Hma1.2p1_1028F.1_g249550' => 'hma', 'Hma1.2p1_1404F.1_g281260' => 'hma', 'Hma1.2p1_2442F.1_g322280' => 'hma', 'HPP92_001910' => 'vpl', 'HPP92_005237' => 'vpl', 'HPP92_005238' => 'vpl', 'HPP92_009125' => 'vpl', 'HPP92_015403' => 'vpl', 'HPP92_018054' => 'vpl', 'HPP92_018055' => 'vpl', 'HPP92_018066' => 'vpl', 'HPP92_018069' => 'vpl', 'HPP92_018493' => 'vpl', 'HPP92_018495' => 'vpl', 'HPP92_026440' => 'vpl', 'HPP92_026994' => 'vpl', 'Hund02850' => 'sun', 'Hund02852' => 'sun', 'Hund02853' => 'sun', 'Hund02855' => 'sun', 'Hund04997' => 'sun', 'Hund18937' => 'sun', 'Hund31104' => 'sun', 'Lalb_Chr01g0003801' => 'lal', 'Lalb_Chr01g0020061' => 'lal', 'Lalb_Chr02g0153831' => 'lal', 'Lalb_Chr03g0026831' => 'lal', 'Lalb_Chr05g0219231' => 'lal', 'Lalb_Chr07g0179381' => 'lal', 'Lalb_Chr07g0180951' => 'lal', 'Lalb_Chr11g0063211' => 'lal', 'Lalb_Chr15g0082241' => 'lal', 'Lalb_Chr19g0137681' => 'lal', 'Lalb_Chr22g0349631' => 'lal', 'Lalb_Chr23g0267881' => 'lal', 'Lj1A159T39' => 'lonja', 'Lj1C50T10' => 'lonja', 'Lj1g0028062' => 'lja', 'Lj2P1055T23' => 'lonja', 'Lj3g0012914' => 'lja', 'Lj4g0004665' => 'lja', 'Lj4g0016388' => 'lja', 'Lj4g0025323' => 'lja', 'Lj4P290T12' => 'lonja', 'Lj5g0001177' => 'lja', 'Lj5g0005120' => 'lja', 'Lj7C680T6' => 'lonja', 'Lj7P256T34' => 'lonja', 'Lj9P704T28' => 'lonja', 'Lsat_1_v5_gn_5_143260' => 'lsa', 'Lsat_1_v5_gn_5_78620' => 'lsa', 'Lsat_1_v5_gn_7_34620' => 'lsa', 'Lsat_1_v5_gn_9_6040' => 'lsa', 'MBI04_g06276_MAGBIO' => 'mbi', 'MBI05_g12567_MAGBIO' => 'mbi', 'MBI14_g35851_MAGBIO' => 'mbi', 'MBI14_g46490_MAGBIO' => 'mbi', 'MD01G1122200' => 'mdo', 'MD03G1099600' => 'mdo', 'MD03G1260000' => 'mdo', 'MD05G1083600' => 'mdo', 'MD07G1191700' => 'mdo', 'MD11G1113800' => 'mdo', 'MD11G1280300' => 'mdo', 'MD15G1055200' => 'mdo', 'MD15G1211600' => 'mdo', 'Medtr1g077960' => 'mtr', 'Medtr2g096475' => 'mtr', 'MELO3C029341.2' => 'cme', 'MELO3C031976.2' => 'cme', 'MELO3C032348.2' => 'cme', 'MELO3C034253.2' => 'cme', 'MELO3C035376.2' => 'cme', 'MSTRG.10540' => 'ama', 'MSTRG.12636' => 'ama', 'MSTRG.1697' => 'ama', 'MSTRG.17844' => 'ama', 'MSTRG.19490' => 'ama', 'MSTRG.20167' => 'ama', 'MSTRG.21535' => 'ama', 'MSTRG.26447' => 'ama', 'MSTRG.6082' => 'ama', 'Nitab4.5_0000759g0300' => 'nta', 'Nitab4.5_0001428g0030' => 'nta', 'Nitab4.5_0001519g0130' => 'nta', 'Nitab4.5_0002286g0040' => 'nta', 'Nitab4.5_0002642g0070' => 'nta', 'Nitab4.5_0002797g0070' => 'nta', 'Nitab4.5_0002824g0030' => 'nta', 'Nitab4.5_0002845g0080' => 'nta', 'Nitab4.5_0003458g0010' => 'nta', 'Nitab4.5_0003498g0010' => 'nta', 'Nitab4.5_0004355g0030' => 'nta', 'Nitab4.5_0005783g0040' => 'nta', 'Nitab4.5_0005783g0060' => 'nta', 'Nitab4.5_0006861g0010' => 'nta', 'Nitab4.5_0009215g0040' => 'nta', 'Nitab4.5_0009364g0020' => 'nta', 'Nitab4.5_0009412g0010' => 'nta', 'Nn1g01801' => 'nnu', 'Nn2g10470' => 'nnu', 'Nn2g12891' => 'nnu', 'Nn6g35547' => 'nnu', 'Nn8g38770' => 'nnu', 'Nn8g39652' => 'nnu', 'Oeu010597.1' => 'oeu', 'Oeu025755.1' => 'oeu', 'Oeu029793.1' => 'oeu', 'Oeu032803.1' => 'oeu', 'Oeu040298.1' => 'oeu', 'Oeu043072.1' => 'oeu', 'Oeu047095.1' => 'oeu', 'Oeu051303.1' => 'oeu', 'Oeu052508.1' => 'oeu', 'Oeu054833.1' => 'oeu', 'Oeu058534.2' => 'oeu', 'Oeu058586.1' => 'oeu', 'Os01g0186900' => 'osa', 'Os01g0582600' => 'osa', 'Os01g0838900' => 'osa', 'Os04g0142100' => 'osa', 'Os04g0644200' => 'osa', 'Os05g0183900' => 'osa', 'Os05g0184500' => 'osa', 'Os05g0184901' => 'osa', 'Os05g0593000' => 'osa', 'Os06g0164500' => 'osa', 'Os07g0175100' => 'osa', 'Os09g0418700' => 'osa', 'Os11g0702700' => 'osa', 'Peaxi162Scf00015g00181' => 'pax', 'Peaxi162Scf00016g00203' => 'pax', 'Peaxi162Scf00070g10021' => 'pax', 'Peaxi162Scf00088g00052' => 'pax', 'Peaxi162Scf00411g00015' => 'pax', 'Peaxi162Scf00494g00053' => 'pax', 'Peaxi162Scf00498g00444' => 'pax', 'Peaxi162Scf00783g00134' => 'pax', 'PGR031G1214' => 'pgr', 'PGR044G0306' => 'pgr', 'PGR102G1625' => 'pgr', 'PGR102G2429' => 'pgr', 'PGR119G1204' => 'pgr', 'PGR119G1791' => 'pgr', 'PGR142G1029' => 'pgr', 'PGR142G3377' => 'pgr', 'PGR142G3545' => 'pgr', 'PGSC0003DMG400000332' => 'stu', 'PGSC0003DMG400010713' => 'stu', 'PGSC0003DMG400025940' => 'stu', 'PGSC0003DMG400030690' => 'stu', 'Pp3c10_15980' => 'ppa', 'Pp3c11_8260' => 'ppa', 'Pp3c14_17150' => 'ppa', 'Pp3c17_22590' => 'ppa', 'Prupe.1G408400' => 'ppe', 'Prupe.2G229800' => 'ppe', 'Prupe.3G034000' => 'ppe', 'Prupe.4G093800' => 'ppe', 'Prupe.6G084600' => 'ppe', 'Prupe.7G205200' => 'ppe', 'Prupe.7G257400' => 'ppe', 'Prupe.8G236200' => 'ppe', 'Psat1g131800' => 'psa', 'Psat3g062640' => 'psa', 'Psat4g016600' => 'psa', 'Psat4g034320' => 'psa', 'Psat5g284000' => 'psa', 'Psat5g284040' => 'psa', 'Psat6g023720' => 'psa', 'Psat6g236440' => 'psa', 'Psat7g125240' => 'psa', 'PSO063G1421' => 'pso', 'PSO210G0994' => 'pso', 'PSO210G1409' => 'pso', 'PSO210G6780' => 'pso', 'PSO339G3973' => 'pso', 'PSO384G2083' => 'pso', 'PSO384G4661' => 'pso', 'PSO541G2995' => 'pso', 'PSO541G3063' => 'pso', 'PSO541G5428' => 'pso', 'PSO781G0153' => 'pso', 'PSO832G1360' => 'pso', 'QL01p033302' => 'qlo', 'QL02p000638' => 'qlo', 'QL02p061895' => 'qlo', 'QL02p090822' => 'qlo', 'QL11p034949' => 'qlo', 'QL12p020641' => 'qlo', 'QL93p1864_0008' => 'qlo', 'RcHm_v2.0_Chr1g0365861' => 'rch', 'RcHm_v2.0_Chr2g0087021' => 'rch', 'RcHm_v2.0_Chr2g0094021' => 'rch', 'RcHm_v2.0_Chr5g0062911' => 'rch', 'RcHm_v2.0_Chr6g0256701' => 'rch', 'RcHm_v2.0_Chr6g0290271' => 'rch', 'RcHm_v2.0_Chr6g0311321' => 'rch', 'Rhsim01G0272600' => 'rsi', 'Rhsim03G0126800' => 'rsi', 'Rhsim03G0253500' => 'rsi', 'Rhsim05G0014900' => 'rsi', 'Rhsim05G0017500' => 'rsi', 'Rhsim05G0017600' => 'rsi', 'Rhsim05G0017700' => 'rsi', 'Rhsim05G0017800' => 'rsi', 'Rhsim05G0086700' => 'rsi', 'Rhsim09G0097200' => 'rsi', 'Rhsim13G0086800' => 'rsi', 'RhsimUnG0158800' => 'rsi', 'Sabra02G0040500' => 'sbr', 'Sabra05G0187600' => 'sbr', 'Sabra06G0174100' => 'sbr', 'Sabra08G0036600' => 'sbr', 'Sabra16G0191400' => 'sbr', 'Sabra18G0052400' => 'sbr', 'Sabra18G0099400' => 'sbr', 'Sabra18G0099600' => 'sbr', 'Sabra18G0100900' => 'sbr', 'Sabra18G0101400' => 'sbr', 'SalBow2G1750' => 'sbo', 'Sc08g0008620' => 'sci', 'Sc17g0001220' => 'sci', 'Sc21g0005510' => 'sci', 'Sc23g0002990' => 'sci', 'Sc23g0005770' => 'sci', 'Sed0001279' => 'sed', 'Sed0001921' => 'sed', 'Sed0006644' => 'sed', 'Sed0006822' => 'sed', 'Sed0013103' => 'sed', 'Sed0016041' => 'sed', 'Sed0020193' => 'sed', 'Sed0021904' => 'sed', 'Sed0027420' => 'sed', 'SEGI_06112' => 'sgi', 'SEGI_06262' => 'sgi', 'SEGI_25904' => 'sgi', 'SEGI_27385' => 'sgi', 'SEGI_34040' => 'sgi', 'SEGI_40852' => 'sgi', 'SHI28893' => 'shi', 'SMO114G0091' => 'smo', 'SMO146G0373' => 'smo', 'Solyc01g107920.2' => 'sly', 'Solyc05g054670.3' => 'sly', 'Solyc06g084150.4' => 'sly', 'Solyc07g007360.3' => 'sly', 'Solyc07g040960.1' => 'sly', 'Solyc08g062680.1' => 'sly', 'Solyc11g073090.1' => 'sly', 'Solyc12g009000.1' => 'sly', 'Sopen01g050090' => 'spe', 'Sopen05g033140' => 'spe', 'Sopen06g035530' => 'spe', 'Sopen07g003430' => 'spe', 'Sopen07g020040' => 'spe', 'Sopen08g018220' => 'spe', 'Sopen11g030750' => 'spe', 'Sopen12g003930' => 'spe', 'Sp3g26660' => 'spa', 'Sp5g00260' => 'spa', 'Sp5g07120' => 'spa', 'Sp6g31580' => 'spa', 'Sp7g27590' => 'spa', 'TAR369G0734' => 'tar', 'TAR411G0003' => 'tar', 'TAR413G0006' => 'tar', 'TAR623G0867' => 'tar', 'TAR624G1352' => 'tar', 'TAR636G3357' => 'tar', 'THA.LOC104803964' => 'tha', 'THA.LOC104806905' => 'tha', 'THA.LOC104810017' => 'tha', 'THA.LOC104811231' => 'tha', 'THA.LOC104814633' => 'tha', 'THA.LOC104815291' => 'tha', 'THA.LOC104824263' => 'tha', 'THA.LOC104824632' => 'tha', 'TPR.G13992' => 'tpr', 'TPR.G24289' => 'tpr', 'TPR.G27674' => 'tpr', 'TPR.G28510' => 'tpr', 'TPR.G34275' => 'tpr', 'TPR.G34285' => 'tpr', 'TPR.G35978' => 'tpr', 'TPR.G38922' => 'tpr', 'TPR.G9431' => 'tpr', 'TWI12G1422' => 'twi', 'TWI15G1051' => 'twi', 'TWI31G0033' => 'twi', 'TWI31G0380' => 'twi', 'TWI32G0762' => 'twi', 'TWI32G0872' => 'twi', 'TWI38G0174' => 'twi', 'TWI63G0330' => 'twi', 'TWI63G0952' => 'twi', 'TWI74G0791' => 'twi', 'unitig_46.g18418' => 'ugi', 'unitig_60.g25456' => 'ugi', 'unitig_60.g25794' => 'ugi', 'unitig_60.g25795' => 'ugi', 'unitig_85.g27256' => 'ugi', 'vmacro03112' => 'vma', 'vmacro06113' => 'vma', 'vmacro09150' => 'vma', 'vmacro14903' => 'vma', 'vmacro17150' => 'vma', 'vmacro17212' => 'vma', 'vmacro17213' => 'vma', 'VMungo0251G1373' => 'vmu', 'VMungo0647G1840' => 'vmu', 'VMungo0720G2343' => 'vmu', 'VMungo1080G0275' => 'vmu', 'VMungo1080G1014' => 'vmu', 'VMungo1215G1254' => 'vmu', 'VMungo1215G1512' => 'vmu', 'VMungo1309G2253' => 'vmu', 'VMungo1309G2701' => 'vmu', 'VMungo1383G3517' => 'vmu' ) $gf_id = 'HOM05D000953' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000953' ) $data_identifier = 'HOM05D000953' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 14, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 1, 'cansat' => (int) 7, 'chi' => (int) 5, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 3, 'cla' => (int) 7, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 1, 'din' => (int) 12, 'dzi' => (int) 17, 'eca' => (int) 9, 'bvu' => (int) 7, 'fan' => (int) 8, 'fve' => (int) 7, 'gra' => (int) 1, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 4, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 4, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3517' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1